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TX: CodeSystem genomicstudy-dataformat

Properties

Profile http://hl7.org/fhir/StructureDefinition/shareablecodesystem
Defining URL http://hl7.org/fhir/genomicstudy-dataformat
Version 5.0.0
Name GenomicStudyDataFormat
Title Genomic Study Data Format
Status active
Definition

The data format relevant to genomics. These formats and relevant codes were pulled from Integrative Genomics Viewer Documentation by Broad Institute.

Publisher HL7 (FHIR Project)
Committee cg
EXT_FMM_LEVEL 1
Value Set Genomic Study Data Format

This case-sensitive code system http://hl7.org/fhir/genomicstudy-dataformat defines the following codes:

Code Display
bam BAM
bed BED
bedpe BEDPE
bedgraph BedGraph
bigbed bigBed
bigWig bigWig
birdsuite-files Birdsuite-Files
broadpeak broadPeak
cbs CBS
chemical-reactivity-probing-profiles Chemical-Reactivity-Probing-Profiles
chrom-sizes chrom-sizes
cn CN
custom-file-formats Custom-File-Formats
cytoband Cytoband
fasta FASTA
gct GCT
cram CRAM
genepred genePred
gff-gtf GFF/GTF
gistic GISTIC
goby Goby
gwas GWAS
igv IGV
loh LOH
maf-multiple-alignment-format MAF-Multiple Alignment Format
maf-mutation-annotation-format MAF-Mutation-Annotation-Format
merged-bam-file Merged BAM File
mut MUT
narrowpeak narrowPeak
psl PSL
res RES
rna-secondary-structure-formats RNA-Secondary-Structure-Formats
sam SAM
sample-info-attributes-file Sample-Info-Attributes-file
seg SEG
tdf TDF
track-line Track Line
type-line Type Line
vcf VCF
wig WIG